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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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47 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ALOX15B
ENSSSCG00000017978
ENSG00000179593
Arachidonate 15-lipoxygenase, type B
Tissue enriched
Detected in some
mouth:
54.7
BPIFB2
ENSSSCG00000029714
ENSG00000078898
BPI fold-containing family B member 2 precursor
Tissue enriched
Detected in some
esophagus:
219.7
BPIFB6
ENSSSCG00000025052
ENSG00000167104
BPI fold containing family B member 6
Tissue enriched
Detected in some
esophagus:
65.1
BRICD5
ENSSSCG00000008045
ENSG00000182685
BRICHOS domain containing 5
Tissue enriched
Detected in some
salivary gland:
25.5
C6orf15
ENSSSCG00000001388
ENSG00000204542
Uncharacterized protein C6orf15 homolog precursor
Tissue enriched
Detected in some
mouth:
122.7
CA6
ENSSSCG00000003391
ENSG00000131686
Carbonic anhydrase 6 precursor
Tissue enriched
Detected in some
mouth:
123.1
CNFN
ENSSSCG00000027022
ENSG00000105427
Cornifelin
Tissue enriched
Detected in some
mouth:
206.7
CRNN
ENSSSCG00000006604
ENSG00000143536
Cornulin
Tissue enriched
Detected in all
mouth:
102.2
CYSRT1
ENSSSCG00000005857
ENSG00000197191
Cysteine rich tail 1
Tissue enriched
Detected in many
mouth:
59.0
KLK1
ENSSSCG00000024668
Kallikrein-1 precursor
Tissue enriched
Detected in some
salivary gland:
400.8
KRT13
ENSSSCG00000017445
ENSG00000171401
Keratin 13
Tissue enriched
Detected in some
mouth:
692.3
KRT24
ENSSSCG00000017465
ENSG00000167916
Keratin 24
Tissue enriched
Detected in many
mouth:
79.2
KRT78
ENSSSCG00000036791
ENSG00000170423
Keratin 78
Tissue enriched
Detected in some
mouth:
131.9
KRT84
ENSSSCG00000000241
ENSG00000161849
Keratin 84
Tissue enriched
Detected in single
mouth:
103.6
na
ENSSSCG00000000628
Tissue enriched
Detected in some
mouth:
35.6
na
ENSSSCG00000000629
Tissue enriched
Detected in many
mouth:
56.3
na
ENSSSCG00000000664
ENSG00000166535
Tissue enriched
Detected in some
mouth:
129.0
na
ENSSSCG00000006592
Tissue enriched
Detected in some
mouth:
258.3
na
ENSSSCG00000006605
ENSG00000215853
Tissue enriched
Detected in some
mouth:
21.3
na
ENSSSCG00000009263
Alpha-S2-casein precursor
Tissue enriched
Detected in single
salivary gland:
437.3
na
ENSSSCG00000023406
ENSG00000169469,ENSG00000169474
Tissue enriched
Detected in some
mouth:
1031.1
na
ENSSSCG00000026339
ENSG00000188100,ENSG00000189090,ENSG00000276430
Tissue enriched
Detected in some
mouth:
170.0
na
ENSSSCG00000027998
Tissue enriched
Detected in many
salivary gland:
945.5
na
ENSSSCG00000030539
ENSG00000174562
Tissue enriched
Detected in some
salivary gland:
64.5
na
ENSSSCG00000033192
ENSG00000213022
Tissue enriched
Detected in some
mouth:
27.7
na
ENSSSCG00000033350
ENSG00000114200
Tissue enriched
Detected in many
salivary gland:
111.4
na
ENSSSCG00000033560
Tissue enriched
Detected in some
mouth:
25.9
na
ENSSSCG00000033600
Tissue enriched
Detected in many
salivary gland:
22.7
na
ENSSSCG00000033903
Tissue enriched
Detected in single
mouth:
12.1
na
ENSSSCG00000034539
Tissue enriched
Detected in some
mouth:
335.8
na
ENSSSCG00000034734
Tissue enriched
Detected in some
esophagus:
23.6
na
ENSSSCG00000035334
Tissue enriched
Detected in some
mouth:
378.5
na
ENSSSCG00000035792
Tissue enriched
Detected in single
salivary gland:
2.2
na
ENSSSCG00000036999
ENSG00000171195
Tissue enriched
Detected in some
salivary gland:
803.4
na
ENSSSCG00000038689
Tissue enriched
Detected in single
salivary gland:
2.7
na
ENSSSCG00000039352
Tissue enriched
Detected in some
mouth:
28.9
na
ENSSSCG00000040051
Tissue enriched
Detected in some
mouth:
53.2
PHEROC
ENSSSCG00000013067
ENSG00000110484
Pheromaxein C subunit precursor
Tissue enriched
Detected in some
salivary gland:
801.2
PRR32
ENSSSCG00000012647
ENSG00000183631
Proline rich 32
Tissue enriched
Detected in some
mouth:
16.9
PRSS27
ENSSSCG00000008062
ENSG00000172382
Serine protease 27
Tissue enriched
Detected in some
mouth:
61.5
SAL1
ENSSSCG00000005474
Salivary lipocalin precursor
Tissue enriched
Detected in some
salivary gland:
3149.4
SCGB1D1
ENSSSCG00000013068
Secretoglobin family 1D member 1 precursor
Tissue enriched
Detected in some
salivary gland:
1595.9
SERPINB12
ENSSSCG00000039151
ENSG00000166634
Serpin family B member 12
Tissue enriched
Detected in some
mouth:
53.8
SPRP
ENSSSCG00000022269
ENSG00000163209
Cornifin
Tissue enriched
Detected in some
mouth:
283.8
STATH
ENSSSCG00000023797
Statherin precursor
Tissue enriched
Detected in some
salivary gland:
180.8
TMPRSS11B
ENSSSCG00000008932
ENSG00000185873
Transmembrane serine protease 11B
Tissue enriched
Detected in some
mouth:
27.9
TP23
ENSSSCG00000040242
Sus scrofa basic proline-rich protein (SL44-1), mRNA.
Tissue enriched
Detected in many
mouth:
49.3
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